Install - Fishgrs

Many users forget this step. FishGRS requires a linkage disequilibrium reference panel:

fishgrs download-ref --species "Salmo salar" --build GRCh38

If you need a clean slate:

conda remove --name fishgrs_env --all
rm -rf ~/.fishgrs

For a Docker removal:

docker rmi fishgrs/fishgrs:latest

Easily install Fish shell plugins, themes, utilities, or completions from a registry or Git repo.

After completing the installation, you must verify that everything works. Run the following command in your terminal: fishgrs install

fishgrs --version

Expected output: fishGRS version 1.2.3 (or similar).

Next, test a minimal calculation to ensure dependencies are linked: Many users forget this step

fishgrs test --example-data

If you see All tests passed!, your fishgrs install was successful. If you see PLINK not found, you need to manually add PLINK to your PATH.

The steps below are generalized and might need adjustments based on the actual requirements of Fishgrs or similar tools. If you need a clean slate: conda remove

$ fishgrs install pure fzf
🐟 Installing pure...
   ✅ pure@1.2.0 installed
🐟 Installing fzf...
   ✅ fzf@3.1.0 installed
📦 Updated fishfile
🔄 Reloading Fish config... done